The bcc coating of Lennard-Jones crystal nuclei vanishes with a change of local structure detection algorithm

Publication date

2025-01-14

Authors

Gispen, WillemORCID 0000-0002-7276-8620ISNI 0000000506582117
Pérez de Alba Ortíz, Alberto
Dijkstra, MarjoleinISNI 0000000358257928

Editors

Advisors

Supervisors

Document Type

Article
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License

taverne

Abstract

Since the influential work of ten Wolde, Ruiz-Montero, and Frenkel [Phys. Rev. Lett. 75, 2714 (1995)], crystal nucleation from a Lennard-Jones fluid has been regarded as a paradigmatic example of metastable crystal ordering at the surface of a critical nucleus. We apply seven commonly used local structure detection algorithms to characterize crystal nuclei obtained from transition path sampling simulations. The polymorph composition of these nuclei varies significantly depending on the algorithm used. Our results indicate that one should be very careful when characterizing the local structure near solid-solid and solid-fluid interfaces. Particles near such interfaces exhibit a local structure distinct from that of bulk fluid or bulk crystal phases. We argue that incorporating outlier detection into the local structure detection method is beneficial, leading to greater confidence in the classification results. Interestingly, the bcc coating nearly disappears when adopting a machine learning method with outlier detection.

Keywords

Taverne, General Physics and Astronomy, Physical and Theoretical Chemistry

Citation

Gispen, W, Pérez de Alba Ortíz, A & Dijkstra, M 2025, 'The bcc coating of Lennard-Jones crystal nuclei vanishes with a change of local structure detection algorithm', Journal of Chemical Physics, vol. 162, no. 2, 024502. https://doi.org/10.1063/5.0239424