Neural net analysis of NMR spectra from strongly-coupled spin systems

Publication date

2024-11

Authors

Prestegard, James H.
Boons, Geert-JanORCID 0000-0003-3111-5954ISNI 0000000120249047
Chopra, PradeepISNI 0000000518029431
Glushka, John
Grimes, John H.
Simon, Bernd

Editors

Advisors

Supervisors

Document Type

Article

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License

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Abstract

Extracting parameters such as chemical shifts and coupling constants from proton NMR spectra is often a first step in using spectra for compound identification and structure determination. This can become challenging when scalar couplings between protons are comparable in size to chemical shift differences (strongly coupled), as is often the case with low-field (bench top) spectrometers. Here we explore the potential utility of AI methods, in particular neural networks, for extracting parameters from low-field spectra. Rather than seeking large experimental sets of spectra for training a network, we chose quantum mechanical simulation of sets, something that is possible with modern software packages and computer resources. We show that application of a network trained on 2-D J-resolved spectra and applied to a spectrum of iduronic acid, shows some promise, but also meets with some obstacles. We suggest that these may be overcome with improved pulse sequences and more extensive simulations.

Keywords

Artificial intelligence, Iduronic acid, J-resolved, Neural net, NMR, Strong coupling, Taverne, Biophysics, Biochemistry, Nuclear and High Energy Physics, Condensed Matter Physics

Citation

Prestegard, J H, Boons, G J, Chopra, P, Glushka, J, Grimes, J H & Simon, B 2024, 'Neural net analysis of NMR spectra from strongly-coupled spin systems', Journal of Magnetic Resonance, vol. 368, 107792. https://doi.org/10.1016/j.jmr.2024.107792