EVpedia: A community web portal for extracellular vesicles research
Publication date
2015-01-01
Authors
Kim, Dae Kyum
Lee, Jaewook
Kim, Sae Rom
Choi, Dong Sic
Yoon, Yae Jin
Kim, Ji Hyun
Go, Gyeongyun
Nhung, Dinh
Hong, Kahye
Jang, Su Chul
Editors
Advisors
Supervisors
Document Type
Article
Metadata
Show full item recordCollections
License
taverne
Abstract
Motivation: Extracellular vesicles (EVs) are spherical bilayered proteolipids, harboring various bioactive molecules. Due to the complexity of the vesicular nomenclatures and components, online searches for EV-related publications and vesicular components are currently challenging. Results: We present an improved version of EVpedia, a public database for EVs research. This community web portal contains a database of publications and vesicular components, identification of orthologous vesicular components, bioinformatic tools and a personalized function. EVpedia includes 6879 publications, 172 080 vesicular components from 263 high-throughput datasets, and has been accessed more than 65 000 times from more than 750 cities. In addition, about 350 members from 73 international research groups have participated in developing EVpedia. This free web-based database might serve as a useful resource to stimulate the emerging field of EV research.
Keywords
MEMBRANE-VESICLES, PROTEOMIC ANALYSIS, EXOSOMES, MICROPARTICLES, CANCER, CELLS, DELIVERY, PLASMA, PROSTASOMES, EXPRESSION, Taverne, Biochemistry, Molecular Biology, Computational Theory and Mathematics, Computer Science Applications, Computational Mathematics, Statistics and Probability, Journal Article, Research Support, Non-U.S. Gov't
Citation
Kim, D K, Lee, J, Kim, S R, Choi, D S, Yoon, Y J, Kim, J H, Go, G, Nhung, D, Hong, K, Jang, S C, Kim, S H, Park, K S, Kim, O Y, Park, H T, Seo, J H, Aikawa, E, Baj-Krzyworzeka, M, Van Balkom, B W M, Belting, M, Blanc, L, Bond, V, Bongiovanni, A, Borràs, F E, Buée, L, Buzás, E I, Cheng, L, Clayton, A, Cocucci, E, Dela Cruz, C S, Desiderio, D M, Di Vizio, D, Ekström, K, Falcon-Perez, J M, Gardiner, C, Giebel, B, Greening, D W, Christina Gross, J, Gupta, D, Hendrix, A, Hill, A F, Hill, M M, Nolte-'T Hoen, E, Hwang, D W, Inal, J, Jagannadham, M V, Jayachandran, M, Jee, Y K, Jørgensen, M, Kim, K P, Kim, Y K, Kislinger, T, Lässer, C, Lee, D S, Lee, H, Van Leeuwen, J, Lener, T, Liu, M L, Lötvall, J, Marcilla, A, Mathivanan, S, Möller, A, Morhayim, J, Mullier, F, Nazarenko, I, Nieuwland, R, Nunes, D N, Pang, K, Park, J, Patel, T, Pocsfalvi, G, Del Portillo, H, Putz, U, Ramirez, M I, Rodrigues, M L, Roh, T Y, Royo, F, Sahoo, S, Schiffelers, R, Sharma, S, Siljander, P, Simpson, R J, Soekmadji, C, Stahl, P, Stensballe, A, Stepień, E, Tahara, H, Trummer, A, Valadi, H, Vella, L J, Wai, S N, Witwer, K, Yánez-Mó, M, Youn, H, Zeidler, R & Gho, Y S 2015, 'EVpedia : A community web portal for extracellular vesicles research', Bioinformatics, vol. 31, no. 6, pp. 933-939. https://doi.org/10.1093/bioinformatics/btu741