Classifying crystals of rounded tetrahedra and determining their order parameters using dimensionality reduction

Publication date

2020-11-24

Authors

van Damme, RobinISNI 0000000492796287
Coli, Gabriele M.ISNI 0000000518030459
Roij, René vanISNI 0000000392993654
Dijkstra, MarjoleinISNI 0000000358257928

Editors

Advisors

Supervisors

Document Type

Article
Open Access logo

License

cc_by_nc_nd

Abstract

Using simulations we study the phase behavior of a family of hard spherotetrahedra, a shape that interpolates between tetrahedra and spheres. We identify 13 close-packed structures, some with packings that are significantly denser than previously reported. Twelve of these are crystals with unit cells of N = 2 or N = 4 particles, but in the shape regime of slightly rounded tetrahedra we find that the densest structure is a quasicrystal approximant with a unit cell of N = 82 particles. All 13 structures are also stable below close packing, together with an additional 14th plastic crystal phase at the sphere side of the phase diagram, and upon sufficient dilution to packing fractions below 50-60% all structures melt. Interestingly, however, upon compressing the fluid phase, self-assembly takes place spontaneously only at the tetrahedron and the sphere side of the family but not in an intermediate regime of tetrahedra with rounded edges. We describe the local environment of each particle by a set of l-fold bond orientational order parameters ql, which we use in an extensive principal component analysis. We find that the total packing fraction as well as several particular linear combinations of ql rather than individual ql’s are optimally distinctive, specifically the differences q4 - q6 for separating tetragonal from hexagonal structures and q4-q8 for distinguishing tetragonal structures. We argue that these characteristic combinations are also useful as reliable order parameters in nucleation studies, enhanced sampling techniques, or inverse-design methods involving odd-shaped particles in general.

Keywords

Computer simulation, Dimensionality reduction, Machine learning, Nanoparticles, Quasicrystal, Self-assembly, Tetrahedra, General Materials Science, General Engineering, General Physics and Astronomy

Citation

Van Damme, R, Coli, G M, Van Roij, R & Dijkstra, M 2020, 'Classifying crystals of rounded tetrahedra and determining their order parameters using dimensionality reduction', ACS Nano, vol. 14, no. 11, pp. 15144-15153. https://doi.org/10.1021/acsnano.0c05288