Pdb-tools: A swiss army knife for molecular structures [version 1; referees: 2 approved]
Publication date
2018-01-01
Authors
Garcia Lopes Maia Rodrigues, João
Teixeira, João M.C.
Trellet, Mikael
Bonvin, Alexandre M.J.J.
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Document Type
Article
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Abstract
The pdb-tools are a collection of Python scripts for working with molecular structure data in the Protein Data Bank (PDB) format. They allow users to edit, convert, and validate PDB files, from the command-line, in a simple but efficient manner. The pdb-tools are implemented in Python, without any external dependencies, and are freely available under the open-source Apache License at https://github.com/haddocking/pdb-tools/ and on PyPI.
Keywords
Bioinformatics, Chemistry, Macromolecules, PDB, Protein structure, Python, Structural biology, General Biochemistry,Genetics and Molecular Biology, General Immunology and Microbiology, Pharmacology, Toxicology and Pharmaceutics(all)
Citation
Rodrigues, J P G L M, Teixeira, J M C, Trellet, M & Bonvin, A M J J 2018, 'Pdb-tools : A swiss army knife for molecular structures [version 1; referees: 2 approved]', F1000Research, vol. 2018, no. 7, 1961. https://doi.org/10.12688/f1000research.17456.1