An open source machine learning framework for efficient and transparent systematic reviews

Publication date

2021-02

Authors

Schoot, Rens van deISNI 0000000393562696
Bruin, Jonathan deORCID 0000-0002-4297-0502ISNI 000000051803672X
Schram, RaoulORCID 0000-0001-6616-230XISNI 0000000443855770
Zahedi, Parisa
Boer, Jan de
Weijdema, FelixORCID 0000-0001-5150-1102
Kramer, Bianca
Huijts, Martijn
Hoogerwerf, Maarten
Ferdinands, GerbrichISNI 0000000506363889

Editors

Advisors

Supervisors

Document Type

Article
Open Access logo

License

cc_by

Abstract

To help researchers conduct a systematic review or meta-analysis as efficiently and transparently as possible, we designed a tool to accelerate the step of screening titles and abstracts. For many tasks—including but not limited to systematic reviews and meta-analyses—the scientific literature needs to be checked systematically. Scholars and practitioners currently screen thousands of studies by hand to determine which studies to include in their review or meta-analysis. This is error prone and inefficient because of extremely imbalanced data: only a fraction of the screened studies is relevant. The future of systematic reviewing will be an interaction with machine learning algorithms to deal with the enormous increase of available text. We therefore developed an open source machine learning-aided pipeline applying active learning: ASReview. We demonstrate by means of simulation studies that active learning can yield far more efficient reviewing than manual reviewing while providing high quality. Furthermore, we describe the options of the free and open source research software and present the results from user experience tests. We invite the community to contribute to open source projects such as our own that provide measurable and reproducible improvements over current practice.

Keywords

Active learning, Machine learning, Open science, Researcher-in-the-loop, Systematic reviewing, Artificial Intelligence, Computer Vision and Pattern Recognition, Computer Networks and Communications, Human-Computer Interaction, Software

Citation

Schoot, R V D, Bruin, J D, Schram, R, Zahedi, P, Boer, J D, Weijdema, F, Kramer, B, Huijts, M, Hoogerwerf, M, Ferdinands, G, Harkema, A, Willemsen, J, Ma, Y, Fang, Q, Hindriks, S, Tummers, L & Oberski, D 2021, 'An open source machine learning framework for efficient and transparent systematic reviews', Nature Machine Intelligence, vol. 3, no. 2, pp. 125-133. https://doi.org/10.1038/s42256-020-00287-7